<
A [showcase](https://barzine.net/shiny/mitra) of a few of my publicly available past projects (includes a demo of [SnRNAseq self-service](https://barzine.net/shiny/mitra/modified_ShinyCell/)).
# Collab'space (projects)
[password protected area](protected_area) --- If you should have access and you have forgetten your password please make a new request so we get you a new one.
# [PhD Thesis and supplementaries](https://barzine.net/shiny/mitra)
Update (October 2023): In light of a recent technical incident, uploading the supplemental material for my PhD thesis is underway. While I have safeguarded all code, input data, and most of the output data through several backups, please note that the static versions of both chapter 4 and chapter 6, which were notably extensive, were previously hosted on the EMBL-EBI website and are no longer accessible. However, this situation is an opportunity for me to transition to the latest version of Shiny and R and rethink the supplemental materials of chapters 4 and 6 - ~~maybe by providing new apps(?)~~ **Update Jan 2025**: A new app is under development but unfortunately I can not say that it is very _active_ at the moment.
- [Supplementary data website](https://barzine.net/shiny/mitra/thesis) --- [Direct access to chapter 3 app](https://barzine.net/shiny/mitra/thesis/chapter3/)
- [Thesis](https://barzine.net/shiny/mitra/thesis): [thesis.pdf(16MB)](https://www.repository.cam.ac.uk/bitstreams/60d408cb-cbea-47de-8eb8-7d1eacf24753/download) --- [<i class="fab fa-github"></i> latex code](https://github.com/barzine/thesis)
<hr>
# Course materials
**Only the bulk RNAseq given as workshop (listed below) are back online for now. Other materials will be uploaded after a good dust off.**
- [Cancer Genomics 2015](https://www.ebi.ac.uk/training/events/2015/cancer-genomics-0/)
- [Cancer Genomics 2014](https://github.com/barzine/TeachingMaterial)
- [RNA-Seq Workshop (Norwich)](courses/RNAseq_norwich)
<!-- # Past projects
[password protected area](https://www.ebi.ac.uk/~mitra/workspace/) - if you don't have one or have forgotten yours please make a new request
# Course materials
- [Cancer Genomics](https://www.ebi.ac.uk/~mitra/courses/CancerGenomics/)
- [EMBL predoc course (2015)](https://www.ebi.ac.uk/~mitra/courses/EMBLPredocCourse2015)
# Other things
- [Tmux](https://www.ebi.ac.uk/~mitra/sh/misc/tmux/tmux_install.sh) can be installed on remote server without sudo
- [Tmux basic configuration file](https://www.ebi.ac.uk/~mitra/sh/misc/tmux/.tmux.conf) because then it becomes a lot more interesting all ready. -->
<hr>
# Social media contacts
- [<i class="fab fa-linkedin"></i>](https://www.linkedin.com/in/mitra-parissa-barzine/?locale=en_US) [Profile Linkedin](https://www.linkedin.com/in/mitra-parissa-barzine/?locale=en_US)
- [<i class="fab fa-github"></i>](https://github.com/barzine) [Profile Github](https://github.com/barzine)
- [<i class="ai ai-google-scholar"></i>](https://scholar.google.co.uk/citations?user=GWYuvE0AAAAJ&hl) [Profile Google scholar](https://scholar.google.co.uk/citations?user=GWYuvE0AAAAJ&hl)
- [<i class="ai ai-orcid"></i>](https://orcid.org/0000-0002-0860-9510) [Orcid page](https://orcid.org/0000-0002-0860-9510)
- [<i class="fab fa-twitter"></i> @BarzineMP](https://twitter.com/barzineMP)
]]>